PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0088s0065.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 775aa    MW: 87804 Da    PI: 4.7619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0088s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039745765222
                          EETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                          +C  Cg+ F ++ +L rHi +
  Mapoly0088s0065.1.p 745 TCDTCGEDFESRNQLFRHITV 765
                          6*****************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.6E-24783IPR001623DnaJ domain
SuperFamilySSF465653.01E-238114IPR001623DnaJ domain
SMARTSM002711.0E-21873IPR001623DnaJ domain
PROSITE profilePS5007618.76981IPR001623DnaJ domain
CDDcd062577.86E-16970IPR001623DnaJ domain
PfamPF002261.7E-201078IPR001623DnaJ domain
PRINTSPR006255.5E-151129IPR001623DnaJ domain
PRINTSPR006255.5E-152944IPR001623DnaJ domain
PRINTSPR006255.5E-155373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
PRINTSPR006255.5E-157392IPR001623DnaJ domain
SuperFamilySSF576671.41E-14304354No hitNo description
SMARTSM003550.38313337IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-10313337IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501578.725313342IPR007087Zinc finger, C2H2
PROSITE patternPS000280315337IPR007087Zinc finger, C2H2
SMARTSM003550.89744768IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305744773IPR007087Zinc finger, C2H2
PROSITE patternPS000280746768IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MADGGRKECW YAILGVSQTA TAEEIRTAYR KEALKWHPDK IQQSGASPQQ CQEATARFQS  60
INQANEVLGD PTERAWYDKH RNEILSSGTA SKDFEFSVWS FFSPSIFSGF GETGKGFFKV  120
YGDVFKKIHK KEQAFAKAYG MGPIGESPSI GSLHTDYSEV DAFYKFWLGF ATVKDFAWCD  180
EYRISDARNR KERRLMEEEN AKIRKRERRD FNDAVRQLAT FVKKRDRRVL DKQLELQMKQ  240
VQKEKELKER RQRLQEEKLA KARAYKEQDW AKLDDGIEEE DINEDEGSYH WKNNIKRKDS  300
KTGDGDKEDP DEFYCIVCSK RFRSEKQWTN HEKSKKHIDR AAALKQSFLE EDEEADSLVK  360
NLETEKGEEQ EASRGHSVDT QDFDEVNVHE YGRANGSERD DEYLRSNDVP NEDPSFKASA  420
SSLDKEAVDM NKAEDDDDDD DDDEASILAA MMNSHRSRQA AAPAEVESVE DEENDDIVCN  480
PKVESPPIDA AEDSDDIEDE DDEDSILAAM LNSHRSRRAV SPLKFGDTAE RTMEDDETQR  540
KVEDSVSSVI THDENLSAPF DDEEKVLESM LESRRCQDSV GIEGKAEPLE ETCVSSMGDD  600
IGSEEETMTN MNAGKSKLRR RSKQERQHLA AQERHDDILK ELSSSYDSRN AFGDNVGNGN  660
SIHVESETTS HREEPEDLTS SSSVAGKKSK PSQRHKQVKQ DVPVKGGASD AKLKIEVQQS  720
ESSKKGIRAR GKKGKAAPKA PPSNTCDTCG EDFESRNQLF RHITVTNHSS VKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A6e-12780268DNAJ
1xbl_A6e-12780268DNAJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP354177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-77DNAJ heat shock N-terminal domain-containing protein